HP lattice protein folding
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Sequence It. Fold It.
Exact branch-and-bound and Metropolis annealing for 2D square and 3D cubic HP lattice models, in portable C with no dependencies.
Paper
Engine source
Engine results
- Exact 2D search · Dill 20-mer
- 3 ms 162,372 states explored, global minimum E = −9
- 3D annealing · 44-mer
- E = −25
- Lattices
- 2 Square (z = 4) and simple cubic (z = 6)
- Dependencies
- 0 C99 / C++11 and the standard library